Proceedings of the National Academy of Sciences · 2022 · 24 citations · 49 references
Life SciencesImmunologyOncologyCancer ImmunologyImmunoregulationImmunotherapyAdaptive Immune ResponsesCell-mediated ImmunityImmune RegulationImmunological MemoryT Cell BiologyT Cell ExhaustionCd8 Positive T CellsMemory-like Exhausted T CellsMicrorna In Immune RegulationMicrorna-mediated Immune RegulationPersistencePersistent Antigen ExposureT-cell Exhaustion RegulationTerminally Exhausted T Cells
CD8 T cells mediate protection against intracellular pathogens and tumors. However, persistent antigen during chronic infections or cancer leads to T cell exhaustion, suboptimal functionality, and reduced protective capacity. Despite considerable work interrogating the transcriptional regulation of exhausted CD8 T cells (TEX), the posttranscriptional control of TEX remains poorly understood. Here, we interrogated the role of microRNAs (miRs) in CD8 T cells responding to acutely resolved or chronic viral infection and identified miR-29a as a key regulator of TEX. Enforced expression of miR-29a improved CD8 T cell responses during chronic viral infection and antagonized exhaustion. miR-29a inhibited exhaustion-driving transcriptional pathways, including inflammatory and T cell receptor signaling, and regulated ribosomal biogenesis. As a result, miR-29a fostered a memory-like CD8 T cell differentiation state during chronic infection. Thus, we identify miR-29a as a key regulator of TEX and define mechanisms by which miR-29a can divert exhaustion toward a more beneficial memory-like CD8 T cell differentiation state.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
An integrated encyclopedia of DNA elements in the human genome