Environmental Research · 2022 · 16 citations · 108 references
Life SciencesBiologyEcologyMicrobial EcologyMicroevolutionPattern FormationCommunity AssemblyMicrobial Community DynamicsMicrobial DivisionCo-occurrence AnalysisCo-occurrence ModelingMicrobial Distribution PatternsSpatial Pattern FormationSpatial Structure In Microbial Communities
108
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin et al. · Applied and Environmental Microbiology · 2009 · 21.8K citations · Full text
Search and clustering orders of magnitude faster than BLAST
R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text
The igraph software package for complex network research
Gábor Csárdi, Tamás Nepusz · Medical Entomology and Zoology · 2006 · 10.4K citations