Microorganisms · 2022 · 10 citations · 38 references
Life SciencesEcologyMicrobiologyAquatic MicrobiologyEnvironmental MicrobiologyMicrobial EcologyAquatic Microbial EcologyFreshwater MicrobiologyLake EcologyMicrobial BiogeochemistryMicrobial Community DynamicsMicrobial Plankton EcologyLake MicrobiologyMicrobial Community StructureMicrobial Response To PollutionPlankton Community EcologyPlankton Community EffectsPlankton Community ResponsesSalinity Effects On Planktonic MicrobesSalt Addition Effects
Freshwater salinization is an ongoing concern for north temperate lakes; however, little is known about its impacts on microbial communities, particularly for bacteria. We tested the hypotheses that road de-icing salt induces changes in the microbial community structure of lake plankton, and that changes due to chloride would differ from those due to urban snowmelt because of additional chemicals in the snowmelt. In a laboratory incubator experiment, an overwintering plankton community in lake water was exposed for two weeks to either NaCl or municipal road snow with the same level of chloride. Microbial community structure as determined by 16S (prokaryotes) and 18S (eukaryotes) rRNA transcript analysis showed changes in response to the chloride-only enrichment, with some rare taxa becoming more prominent. Consistent with our hypothesis, the salt and the snow treatments induced different community changes. These results indicate that ecotoxicology assays based on a single salt addition may not reflect the in situ effects of salt-contaminated urban snow, and that the combined chemical effects of urban snowmelt require direct testing.
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Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin et al. · Applied and Environmental Microbiology · 2009 · 21.8K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
VSEARCH: a versatile open source tool for metagenomics
Torbjørn Rognes, Tomáš Flouri, Ben Nichols et al. · PeerJ · 2016 · 11K citations · Full text