Nature Biotechnology · 2022 · 63 citations · 53 references
MedicineMolecular BiologyMolecular GeneticsCancer GeneticsMolecular OncologyRna ProcessingAlternative SplicingCancer GenomicsExon-intron OrganizationIntron StructureNoncoding Rna In CancerRna SplicingCancer-associated SplicingIntron Target SelectionMutation Targeting MotifsSomatic Mutation TargetingSplice Site RecognitionSplice-site MutationsSplicing Control
53
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text