Concepedia

Mice with diverse microbial exposure histories as a model for preclinical vaccine testing

Jessica K. Fiege, Katharine E. Block, Mark Pierson, Hezkiel A. Nanda, Frances K. Shepherd, Clayton K. Mickelson, J. Michael Stolley, William E. Matchett, Sathi Wijeyesinghe, David K. Meyerholz,

Cell Host & Microbe · 2021 · 75 citations · 54 references

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54

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha et al. · Proceedings of the National Academy of Sciences · 2005 · 56.7K citations · Full text

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<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

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ggplot2: Elegant Graphics for Data Analysis

Cedric E. Ginestet · Journal of the Royal Statistical Society Series A (Statistics in Society) · 2011 · 14.8K citations

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