ACS Omega · 2021 · 11 citations · 36 references
Life SciencesBiotechnologyMolecular BiologyGenomicsMolecular BiotechnologyProtein EngineeringHigh-throughput SynthesisLibrary ConstructionProtein SynthesisHigh-throughput Library ConstructionMutant IdentificationMutant LibrariesMutant Library ConstructionMutant Library DevelopmentOligonucleotide Library SynthesisProtein Library ConstructionProtein Library Design
designed Physically Isolated Clonal-Mutant (uPIC-M) libraries that utilizes recent advances in oligo synthesis, high-throughput sample preparation, and next-generation sequencing. To demonstrate uPIC-M, we created a scanning mutant library of SpAP, a 541 amino acid alkaline phosphatase, and recovered 94% of desired mutants in a single iteration. uPIC-M uses commonly available equipment and freely downloadable custom software and can produce a 5000 mutant library at 1/3 the cost and 1/5 the time of traditional techniques.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
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Enzymatic assembly of DNA molecules up to several hundred kilobases
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Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM
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