Gastroenterology · 2021 · 254 citations · 34 references
Life SciencesInfectious DiseasesMicrobiologyMetagenomicsMicrobial MetabolismMicrobiome ResearchGut MicrobiomeGut MicrobiotaMetagenomic AnalysisMicrobial Community ProfilingMicrobiome DysbiosisMicrobiome FunctionFunctional ProfilingGut Microbiome AlterationsGut Microbiota CompositionSars-cov-2 InfectionShort-chain Fatty Acid DepletionShort-chain Fatty Acid MetabolismShotgun Metagenomic AnalysisShotgun Metagenomic Profiling
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Fast gapped-read alignment with Bowtie 2
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Fast and sensitive protein alignment using DIAMOND
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