Journal of the American Chemical Society · 2021 · 55 citations · 58 references
PharmacyMedicinal ChemistryPharmacologyComputational ChemistryComputational Medicinal ChemistryStructural BiologyAntiviral TherapyConformational AnalysisMacrocyclic Drug DesignMacromolecular StructureMolecular ModelingProtein ConformationConformational OptimizationDirect-acting Antiviral AgentsDirect-acting AntiviralsHydrogen BondingIntermolecular Protein InteractionsIntramolecular Hydrogen BondingLigand Steric EffectsMacrocycle Conformation Analysis
in 3D PSA between polar and apolar environments and provide the structural basis for the perplexingly favorable passive permeability of the molecule. Crystal packing and protein binding resulting in strong intermolecular interactions disrupt these intramolecular interactions. Crystalline Form I benefits from strong intermolecular interactions, whereas the weaker intermolecular interactions in Form II are partially compensated by the energetic advantage of an IMHB. Like Form I, no IMHB is observed within the receptor-bound conformation; instead, an intermolecular H-bond contributes to the potency of the molecule. The choice of metastable Form II is derisked through strategies accounting for crystal surface and packing features to manage higher form specific solid-state chemical reactivity and specific processing requirements. Overall, the results show an unambiguous link between structural features and derived properties from crystallization to dissolution, permeation, and docking into the protein pocket.
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Generalized Gradient Approximation Made Simple
John P. Perdew, Kieron Burke, Matthias Ernzerhof · Physical Review Letters · 1996 · 211.5K citations · Full text
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<i>Ab initio</i>molecular dynamics for liquid metals
Georg Kresse, J. Häfner · Physical review. B, Condensed matter · 1993 · 44.9K citations
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Yan Zhao, Donald G. Truhlar · Theoretical Chemistry Accounts · 2007 · 30K citations · Full text
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