Chemical Science · 2021 · 92 citations · 55 references
PharmacyBiophysicsMedicinal ChemistryDrug DesignDrug DiscoveryStructural BiologyConformational SamplingLigand BindingEnergy EstimatesFirst-principles ModelingProtein Conformational EnsemblesProtein-ligand Binding Free Energy CalculationsProtein-ligand Complex ModelingRotamer Analysis
Molecular dynamics based absolute protein–ligand binding free energies can be calculated accurately and at large scale to facilitate drug discovery.
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A smooth particle mesh Ewald method
Ulrich Essmann, L. Perera, Max L. Berkowitz et al. · The Journal of Chemical Physics · 1995 · 22.9K citations