Microbiology Spectrum · 2021 · 22 citations · 53 references
Life SciencesMicrobiologyMicrobial EcologyMicrobiome ResearchNeonatologyEnvironmental MicrobiomesGut MicrobiomeGut MicrobiotaMicrobial Community ProfilingMicrobiome DevelopmentEnvironmental Microbial ColonizationInfant Gut MicrobiotaMicrobial ColonizationMicrobial Colonization DynamicsNegative ControlsNeonatal Microbiome Development
Much like the recent placental microbiome controversy, studies of neonatal meconium reporting bacterial communities within the fetal and neonatal gut imply that microbial colonization begins prior to birth. However, recent work has shown that placental microbiomes almost exclusively represent contamination from lab reagents and the environment.
53
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Maria Gloria Domínguez-Bello, Elizabeth K. Costello, Mónica Contreras et al. · Proceedings of the National Academy of Sciences · 2010 · 4.7K citations · Full text
Life Sciences, Biology, Microbiology +16