Concepedia

Dysbiosis exacerbates colitis by promoting ubiquitination and accumulation of the innate immune adaptor STING in myeloid cells

Liraz Shmuel-Galia, Fiachra Humphries, Xuqiu Lei, Simona Ceglia, Ruth Wilson, Zhaozhao Jiang, Natália Ketelut-Carneiro, Sage E. Foley, Susanne Pechhold, JeanMarie Houghton,

Immunity · 2021 · 141 citations · 53 references

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53

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar · Nature Methods · 2013 · 17.3K citations

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UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

Catherine Lozupone, Rob Knight · Applied and Environmental Microbiology · 2005 · 8.6K citations · Full text

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Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

James J. Kozich, Sarah L. Westcott, Nielson T. Baxter et al. · Applied and Environmental Microbiology · 2013 · 7.5K citations · Full text

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