Archives of Medical Science · 2021 · 10 citations · 35 references
Life SciencesGeneticsMolecular GeneticsAutoimmunityMedical GeneticsRheumatologyAutoimmune Disease Susceptibility GenesAutoimmune DiseasesGenetic Susceptibility To AutoimmunityGenotype-phenotype Association AnalysisRheumatoid ArthritisVitamin DAutoimmune Disease GeneticsDisease Susceptibility AssociationFunctional DeteriorationHaplotype Frequency AnalysisLogistic RegressionVitamin D Receptor GeneticsVitamin D Receptors
Introduction Rheumatoid arthritis (RA) is a chronic inflammatory autoimmune disease of unknown etiology which causes progressive deterioration of the joints, leading to severe pain and functional disability. Vitamin D and its receptor (VDR) play a significant part in the onset of autoimmune diseases such as RA. The purpose of this study was to evaluate the association between VDR gene polymorphisms and risk of developing RA. Material and methods A retrospective study was performed, including 214 RA cases and 748 controls of Caucasian origin. FokI (rs2228570), BsmI (rs1544410), TaqI (rs731236), ApaI (rs7975232) and Cdx2 (rs11568820) gene polymorphisms were analyzed by TaqMan Results The recessive logistic regression model showed that the VDR FokIAA genotype was associated with lower risk of RA (p = 0.0255; OR = 0.58; 95% CI: 0.35–0.92). No other genetic polymorphism showed any association with RA in any of the models tested. Haplotype analysis revealed that the haplotypes ACGAG (p = 0.033; OR = 1.62; 95% CI: 1.04–2.53) and GTGCA (p < 0.01; OR = 2.77; 95% CI: 1.53–4.98) for BsmI, Cdx2, FokI, ApaI and TaqI were associated with higher risk of RA. Conclusions VDR FokI gene polymorphism showed a trend for risk of RA, taking into account the variables of gender, age and tobacco use, and preventing false positives. Among our patients we found no influence of VDR BsmI, TaqI, ApaI and Cdx2 on the risk of developing RA. However, haplotype analysis indicated that the haplotypes ACGAG and GTGCA were associated with higher risk of RA.
35
Haploview: analysis and visualization of LD and haplotype maps
Jeffrey C. Barrett, Ben Fry, Julian Maller et al. · Bioinformatics · 2004 · 14.7K citations · Full text
SNPStats: a web tool for the analysis of association studies
Xavier Solé, Elisabet Guinó, Joan Valls et al. · Bioinformatics · 2006 · 2K citations · Full text
Hidekazu Arai, Ken‐ichi Miyamoto, Yutaka Taketani et al. · Journal of Bone and Mineral Research · 1997 · 654 citations
N A Morrison, R. Yeoman, Paul J. Kelly et al. · Proceedings of the National Academy of Sciences · 1992 · 605 citations
One year in review 2020: pathogenesis of rheumatoid arthritis
Daiana Giannini, M. Antonucci, Fiorella Petrelli et al. · Clinical and Experimental Rheumatology · 2020 · 603 citations · Full text