Assembly of abundant and rare bacterial and fungal sub-communities in different soil aggregate sizes in an apple orchard treated with cover crop and fertilizer

R: A Language and Environment for Statistical Computing

R Core Team · 2000 · 353K citations · Full text

Natural Sciences, Computer Science, Statistical Computing +10

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text

Life Sciences, Bioinformatics, Biology +13

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast, Elmar Pruesse, Pelin Yilmaz et al. · Nucleic Acids Research · 2012 · 34K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Classification and Regression by randomForest

Andy Liaw, Matthew C. Wiener · 2007 · 18.4K citations

Computing, Computer Science, Data Mining +16