Concepedia

Loss of microbial diversity does not decrease γ-HCH degradation but increases methanogenesis in flooded paddy soil

Xueling Yang, Jing Yuan, Ningning Li, Ashley E. Franks, Jue Shentu, Yu Luo, Jianming Xu, Yan He

Soil Biology and Biochemistry · 2021 · 61 citations · 88 references

DOI

Concepts

References

88

Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text

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UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar · Nature Methods · 2013 · 17.3K citations

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UCHIME improves sensitivity and speed of chimera detection

R. C. Edgar, Brian J. Haas, José C. Clemente et al. · Bioinformatics · 2011 · 15.5K citations · Full text

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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

J. Gregory Caporaso, Christian L. Lauber, William A. Walters et al. · Proceedings of the National Academy of Sciences · 2010 · 10K citations

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