Communications Biology · 2021 · 132 citations · 34 references
Life SciencesMicrobiologyOncologyCancer ImmunologyGastrointestinal OncologyMicrobiome ResearchGut MicrobiomeGut MicrobiotaMicrobial DiversityMicrobiome CompositionMicrobiome DiversityMucosal Immune SystemCompositional VariabilityFecal Microbiome AnalysisGut Microbiome DiversityGut Microbiota CompositionHost-microbiome Interactions In CancerMicrobial Ecology Of The GutRadiation Therapy ResponseTumor Immune Cell Infiltration
Diversity of the gut microbiome is associated with higher response rates for cancer patients receiving immunotherapy but has not been investigated in patients receiving radiation therapy. Additionally, current studies investigating the gut microbiome and outcomes in cancer patients may not have adjusted for established risk factors. Here, we sought to determine if diversity and composition of the gut microbiome was independently associated with survival in cervical cancer patients receiving chemoradiation. Our study demonstrates that the diversity of gut microbiota is associated with a favorable response to chemoradiation. Additionally, compositional variation among patients correlated with short term and long-term survival. Short term survivor fecal samples were significantly enriched in Porphyromonas, Porphyromonadaceae, and Dialister, whereas long term survivor samples were significantly enriched in Escherichia Shigella, Enterobacteriaceae, and Enterobacteriales. Moreover, analysis of immune cells from cervical tumor brush samples by flow cytometry revealed that patients with a high microbiome diversity had increased tumor infiltration of CD4+ lymphocytes as well as activated subsets of CD4 cells expressing ki67+ and CD69+ over the course of radiation therapy. Modulation of the gut microbiota before chemoradiation might provide an alternative way to enhance treatment efficacy and improve treatment outcomes in cervical cancer patients.
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Rebecca L. Siegel, Kimberly D. Miller, Ahmedin Jemal · CA A Cancer Journal for Clinicians · 2019 · 21K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
Metagenomic biomarker discovery and explanation
Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower, J. Fah Sathirapongsasuti, Nicola Segata et al. · Nature · 2012 · 11.9K citations · Full text
Life Sciences, Biology, Microbiology +17