Heliyon · 2021 · 40 citations · 45 references
PharmacyChemistryMedicinal ChemistryComputational ChemistryDrug DesignDrug DiscoveryLigand BindingLigand-based DesignMolecular DockingMolecular Orbital TheoryProtein StructureProtein-ligand DockingDocking-based Drug DesignFrontier Molecular Orbital TheoryHelicobacter Pylori InfectionLigand-protein DockingMolecular Electrostatic PotentialNatural Bond OrbitalsNatural Orbital AnalysisNatural Orbital Theory
which causes peptic ulcer disease. The docking studies revealed that 2,6-bis(3,4-dihydroxyphenyl)-3-phenethylpiperidin-4-one (BDPO) is identified as the most promising new compound with active nature against 2B7N with a binding affinity value of -8.0 Kcal/mol. The molecular structure of BDPO has been analyzed by DFT based theoretical calculations at the B3LYP/6-311++G(d,p) level of theory using the Gaussian 16W program package. The molecular electrostatic potential, Frontier molecular energy gap, and Mulliken population analysis have been used to understand the reactive site of the molecule. The stability and hyper-conjugative interactions were studied by natural bond orbital analysis (NBO) based on a second-order perturbation approach. The thermodynamic properties like thermal energy, specific heat capacity, and entropy at different temperatures were also calculated. The calculated first-order hyper polarizability results show that the title compound is 25.3 times greater than that of standard reference material, urea. So the title molecule is a good non-linear material. Also, this molecule has Van der Waals attraction and steric effect. It undergoes local excitation for the first five excitations.
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