phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

PLoS ONE

glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling

M. Brooks, Kasper Kristensen, Koen J. van Benthem, +6

The R Journal

Glmmtmb PackageZero-inflated ModelsCount DataEngineeringRobust Modeling +10

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, +2

PeerJ

A protocol for data exploration to avoid common statistical problems

Alain F. Zuur, Elena N. Ieno, Chris S. Elphick

Methods in Ecology and Evolution

EngineeringEcological ModellingInteractive Data ExplorationData ExplorationCommon Statistical Problems +16

Parallel Declines in Pollinators and Insect-Pollinated Plants in Britain and the Netherlands

Jacobus C. Biesmeijer, Stuart P. M. Roberts, Menno Reemer, +9

Science

BiologyBiodiversityEngineeringPlant-insect InteractionInsect Conservation +11

Modern Applied Statistics With S

Technometrics

Wild Pollinators Enhance Fruit Set of Crops Regardless of Honey Bee Abundance

Lucas A. Garibaldi, Ingolf Steffan‐Dewenter, Rachael Winfree, +47

Science

Honey Bee AbundanceBotanyInsect ConservationEntomologyAgricultural Economics +15

Bee foraging ranges and their relationship to body size

Sarah S. Greenleaf, Neal M. Williams, Rachael Winfree, +1

Oecologia

BiologyForagingBody SizeFitnessEntomology +3

Introducing the bipartite Package: Analysing Ecological Networks

Carsten F. Dormann, Bernd Gruber, Jochen Fründ

GoeScholar The Publication Server of the Georg-August-Universität Göttingen (Georg-August-Universität Göttingen)

EngineeringSpecie InteractionInteraction NetworkNetwork AnalysisTrophic Impact +16

SCALE-DEPENDENT EFFECTS OF LANDSCAPE CONTEXT ON THREE POLLINATOR GUILDS

Ingolf Steffan‐Dewenter, Ute Münzenberg, C. Burger, +2

Ecology

Landscape ProcessesBiodiversityEngineeringInsect ConservationEntomology +8