Concepedia

Extended-spectrum beta-lactamase-producing Escherichia coli and antimicrobial resistance in municipal and hospital wastewaters in Czech Republic: Culture-based and metagenomic approaches

Iva Kutilová, Matej Medvecký, Pimlapas Leekitcharoenphon, Patrick Munk, Martina Masaříková, Lenka Dávidová‐Geržová, Ivana Jamborová, Valeria Bortolaia, Sünje Johanna Pamp, Monika Dolejská

Environmental Research · 2020 · 48 citations · 49 references

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49

R: A Language and Environment for Statistical Computing

R Core Team · 2000 · 353K citations · Full text

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Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

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