Concepedia

Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness

Rafael N. Leite, Rebecca T. Kimball, Edward L. Braun, Elizabeth P. Derryberry, Peter A. Hosner, Graham E. Derryberry, Marina Anciães, Jessica A. McKay, Alexandre Luis Padovan Aleixo, Camila C. Ribas,

Molecular Phylogenetics and Evolution · 2020 · 38 citations · 60 references

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60

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh, Daron M. Standley · Molecular Biology and Evolution · 2013 · 48.3K citations · Full text

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

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PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

Robert Lanfear, Paul B. Frandsen, April Wright et al. · Molecular Biology and Evolution · 2016 · 5.4K citations · Full text

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