Bone · 2020 · 13 citations · 50 references
Life SciencesGeneticsMolecular BiologyEpigeneticsEpigenomicsGene ExpressionCancer EpigeneticsCancer EpigenomicsDna MethylationDna Methylation ProfilingEpigenetic Alterations In CancerEpigenetic Regulation In CancerAberrant Dna MethylationCancer Dna Methylation SignaturesComparative Dna MethylationGenome-wide Methylation AnalysisGenome-wide Methylation ProfilingMethylome ProfilingTumor Suppressor Gene Methylation
50
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder, Steve Horvath · BMC Bioinformatics · 2008 · 29.1K citations · Full text