Journal of Hospital Infection · 2020 · 27 citations · 28 references
Veterinary MedicineInfectious DiseasesMicrobiologyEpidemiologyMedical MicrobiologyMolecular EpidemiologyBacterial Disease EpidemiologyBacterial EpidemiologyBacterial InfectionsDisease EpidemiologyGenomic EpidemiologyNosocomial InfectionsCorynebacterial InfectionsEpidemiology Of Bacterial InfectionsHospital Outbreak InvestigationMolecular Outbreak InvestigationNosocomial Bacterial InfectionsNosocomial Outbreak DynamicsSurveillance Of Nosocomial Infections
28
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
BLAST+: architecture and applications
Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text
Anna-Pelagia Magiorakos, Arjun Srinivasan, Roberta B. Carey et al. · Clinical Microbiology and Infection · 2011 · 14K citations
SOAP: short oligonucleotide alignment program
Ruiqiang Li, Yingrui Li, Karsten Kristiansen et al. · Bioinformatics · 2008 · 3.7K citations · Full text