Nucleic Acids Research · 2020 · 2.4K citations · 28 references
Life SciencesBioinformaticsMolecular BiologyComputational BiologyGenomicsProteomicsProtein Database SearchProtein Function AnnotationProtein Sequence AnalysisProteomics Data IntegrationSequence Similarity SearchProtein AnnotationProtein Domain ClassificationProtein FamiliesProtein Family ClassificationProtein Reference DatabasesProtein Sequence Database ConstructionProtein Superfamily Classification
InterPro integrates protein sequence signatures from multiple databases to classify proteins into families, domains, and sites, providing descriptions, literature references, and Gene Ontology terms, and has been a widely used resource since its 1999 founding. This paper reports the 20th‑year status of InterPro version 81.0, detailing updates to its content, the launch of a new website and REST API, and performance enhancements to InterProScan. InterProScan, the underlying software, searches protein and nucleic acid sequences against InterPro’s predictive signatures—models of families, domains, or sites—and combines equivalent signatures to produce comprehensive annotations.
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. InterProScan is the underlying software that allows protein and nucleic acid sequences to be searched against InterPro's signatures. Signatures are predictive models which describe protein families, domains or sites, and are provided by multiple databases. InterPro combines signatures representing equivalent families, domains or sites, and provides additional information such as descriptions, literature references and Gene Ontology (GO) terms, to produce a comprehensive resource for protein classification. Founded in 1999, InterPro has become one of the most widely used resources for protein family annotation. Here, we report the status of InterPro (version 81.0) in its 20th year of operation, and its associated software, including updates to database content, the release of a new website and REST API, and performance improvements in InterProScan.
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