Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco

The PRIDE database and related tools and resources in 2019: improving support for quantification data

Yasset Pérez‐Riverol, Attila Csordás, Jingwen Bai et al. · Nucleic Acids Research · 2018 · 7.4K citations · Full text

Life Sciences, Biochemistry, Bioinformatics +15

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Jimmy K. Eng, Ashley L. McCormack, John R. Yates · Journal of the American Society for Mass Spectrometry · 1994 · 6.6K citations

Life Sciences, Biochemistry, Bioinformatics +17

Biopython: freely available Python tools for computational molecular biology and bioinformatics

Peter Cock, Tiago Antão, Jeffrey T. Chang et al. · Bioinformatics · 2009 · 6.6K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +10

Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search

Andrew Keller, Alexey I. Nesvizhskii, Eugene Kolker et al. · Analytical Chemistry · 2002 · 5K citations

Life Sciences, Bioinformatics, Computer Science +17

A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry

Alexey I. Nesvizhskii, Andrew Keller, Eugene Kolker et al. · Analytical Chemistry · 2003 · 5K citations

Life Sciences, Bioinformatics, Biostatistics +17