Fengchao Yu

IonQuant Enables Accurate and Sensitive Label-Free Quantification With FDR-Controlled Match-Between-Runs

Fengchao Yu, Sarah E. Haynes, Alexey I. Nesvizhskii · Molecular & Cellular Proteomics · 2021 · 536 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +17

dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts

Vadim Demichev, Łukasz Szyrwiel, Fengchao Yu et al. · Nature Communications · 2022 · 425 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +16

Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant

Fengchao Yu, Sarah E. Haynes, Guo Ci Teo et al. · Molecular & Cellular Proteomics · 2020 · 392 citations · Full text

Medicine, Biochemistry, Chromatographic Analysis +16

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma

Chen Huang, Lijun Chen, Sara R. Savage et al. · Cancer Cell · 2021 · 380 citations · Full text

Medicine, Cancer Biology, Oncology +17

Identification of modified peptides using localization-aware open search

Fengchao Yu, Guo Ci Teo, Andy T. Kong et al. · Nature Communications · 2020 · 314 citations · Full text

Life Sciences, Biochemistry, Bioinformatics +17