Concepedia

Whole genome sequencing and de novo assembly of three virulent Indian isolates of Leptospira

Kumari Snehkant Lata, Vibhisha Vaghasia, Shivarudrappa B. Bhairappanavar, Swapnil Kumar, Garima Ayachit, Saumya Patel, Jayashankar Das

Infection Genetics and Evolution · 2020 · 13 citations · 41 references

DOI

Concepts

References

41

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh, Daron M. Standley · Molecular Biology and Evolution · 2013 · 48.3K citations · Full text

, , +11

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar, Glen Stecher, Michael Li et al. · Molecular Biology and Evolution · 2018 · 38.8K citations · Full text

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

, , +17

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

, , +13