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Microphysiological system modeling of ochratoxin A-associated nephrotoxicity

Tomoki Imaoka, Jade Yang, Lu Wang, Matthew G. McDonald, Zahra Afsharinejad, Theo K. Bammler, Kirk Van Ness, Catherine K. Yeung, Allan E. Rettie, Jonathan Himmelfarb,

Toxicology · 2020 · 39 citations · 32 references

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32

A scaling normalization method for differential expression analysis of RNA-seq data

Mark D. Robinson, Alicia Oshlack · Genome biology · 2010 · 8.6K citations · Full text

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From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline

Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth · F1000Research · 2016 · 1.3K citations · Full text

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From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline

Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth · F1000Research · 2016 · 832 citations · Full text

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Testing significance relative to a fold-change threshold is a TREAT

Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 776 citations · Full text

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It’s DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR

Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth · Methods in molecular biology · 2016 · 489 citations

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