Microorganisms · 2020 · 31 citations · 50 references
Supplementation of probiotics is a promising gut microbiota-targeted therapeutic method for hyperlipidemia and atherosclerosis. However, the selection of probiotic candidate strains is still empirical. Here, we obtained a human-derived strain, <i>Lactobacillus mucosae</i> A1, which was shown by metagenomic analysis to be promoted by a high-fiber diet and associated with the amelioration of host hyperlipidemia, and validated its effect on treating hyperlipidemia and atherosclerosis as well as changing structure of gut microbiota in <i>ApoE<sup>-/-</sup></i> mice on a Western diet. <i>L. mucosae</i> A1 attenuated the severe lipid accumulation in serum, liver and aortic sinus of <i>ApoE<sup>-/-</sup></i> mice on a Western diet, while it also reduced the serum lipopolysaccharide-binding protein content of mice, reflecting the improved metabolic endotoxemia. In addition, <i>L. mucosae</i> A1 shifted the gut microbiota structure of <i>ApoE<sup>-/-</sup></i> mice on a Western diet, including recovering a few members of gut microbiota enhanced by the Western diet. This study not only suggests the potential of <i>L. mucosae</i> A1 to be a probiotic in the treatment of hyperlipidemia and atherosclerosis, but also highlights the advantage of such function-based rather than taxonomy-based strategies for the selection of candidate strains for the next generation probiotics.
50
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 33.5K citations · Full text
Illumina Amplicon Data, Omics Datasets, Spectral Searching +5
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 18.4K citations