Improved Brassica oleracea JZS assembly reveals significant changing of LTR-RT dynamics in different morphotypes

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

Life Sciences, Bioinformatics, Biology +12

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text

Computing, Computer Engineering, Computer Science +8

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

Versatile and open software for comparing large genomes

Stefan Kurtz, Adam M. Phillippy, Arthur L. Delcher et al. · Genome biology · 2004 · 5.8K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +17

Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments

Gerard Talavera, José Castresana · Systematic Biology · 2007 · 5.8K citations

Life Sciences, Bioinformatics, Biology +16