The Journal of Chemical Physics · 2020 · 17 citations · 29 references
Natural SciencesChemistryComputational ChemistryMolecular PhysicsStructural BioinformaticsChemical Space AnalysisChemical Space ExplorationMolecular DescriptorsMolecular Property PredictionPotential Energy SurfacesElectronic Structure SimulationMachine Learning Potential Energy SurfacesMolecular Descriptor DesignMolecular Energy PredictionMolecular Potential Energy SurfacesPotential Energy Surface AnalysisPotential Energy Surface ConstructionQuantum Chemical Descriptors
Potential energy surfaces (PESs) play a central role in our understanding of chemical reactions. Despite the impressive development of efficient electronic structure methods and codes, such computations still remain a difficult task for the majority of relevant systems. In this context, artificial neural networks (NNs) are promising candidates to construct the PES for a wide range of systems. However, the choice of suitable molecular descriptors remains a bottleneck for these algorithms. In this work, we show that a principal component analysis (PCA) is a powerful tool to prepare an optimal set of descriptors and to build an efficient NN: this protocol leads to a substantial improvement of the NNs in learning and predicting a PES. Furthermore, the PCA provides a means to reduce the size of the input space (i.e., number of descriptors) without losing accuracy. As an example, we applied this novel approach to the computation of the high-dimensional PES describing the keto-enol tautomerism reaction occurring in the acetone molecule.
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Projector augmented-wave method
Peter E. Blöchl · Physical review. B, Condensed matter · 1994 · 90.8K citations
Natural Sciences, Chemistry, Physics +17
<i>Ab initio</i>molecular dynamics for liquid metals
Georg Kresse, J. Häfner · Physical review. B, Condensed matter · 1993 · 44.9K citations
Natural Sciences, Chemistry, Physics +17