bioRxiv (Cold Spring Harbor Laboratory) · 2020 · 23 citations · 109 references
MedicineNeurobiologyNeuroscienceCellular NeuroscienceGlial BiologyInflammationAstrocyte BiologyGlial Cell BiologyGlial Cell Molecular BiologyGlial Gene ExpressionGlial Response To InjuryNeuroinflammationAstrocyte GeneticsAstrocyte PhysiologyAstrocyte ResponseAstrocyte TranscriptomicsDefense Response MechanismsMitochondrial Metabolism In AstrocytesNeural RepairSerum-free Culture
Astrocytes are central to neurological disorders, yet most knowledge derives from mouse models, and the extent of human–mouse similarities and differences remains poorly defined, limiting translational progress. Our analyses reveal that while human and mouse astrocytes largely conserve gene expression, species‑specific differences appear in defense, metabolism, oxidative‑stress susceptibility, hypoxia‑induced repair, and inflammatory antigen presentation, underscoring species‑dependent properties that can guide translation from mice to humans.
Abstract Astrocytes play important roles in neurological disorders such as stroke, injury, and neurodegeneration. Most knowledge on astrocyte biology is based on studies of mouse models and the similarities and differences between human and mouse astrocytes are insufficiently characterized, presenting a barrier in translational research. Based on analyses of acutely purified astrocytes, serum-free cultures of primary astrocytes, and xenografted chimeric mice, we find extensive conservation in astrocytic gene expression between human and mouse samples. However, the genes involved in defense response and metabolism show species-specific differences. Human astrocytes exhibit greater susceptibility to oxidative stress than mouse astrocytes, due to differences in mitochondrial physiology and detoxification pathways. In addition, we find that mouse but not human astrocytes activate a molecular program for neural repair under hypoxia, whereas human but not mouse astrocytes activate the antigen presentation pathway under inflammatory conditions. Here, we show species-dependent properties of astrocytes, which can be informative for improving translation from mouse models to humans.
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STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text