Journal of Agricultural and Food Chemistry · 2020 · 17 citations · 21 references
PharmacyEntomologyPharmacologyDrug DiscoveryEnzymologyStructure-activity RelationshipsBiomolecular InteractionsLigand BindingMolecular DockingQuantitative Structure-activity RelationshipsReceptor-ligand InteractionsStructure-activity Relationship AnalysisActive Site InteractionsComputational Structure-activity ModelingDrosophila ModelsLigand-binding EnergeticsMolecular Docking For EnzymesPredictive Modeling Of BioactivityProtein-ligand Complex ModelingStructure-activity Relationship Modeling
The goal of this study was to perform in silico identification of bioinsecticidal potential of 42 monoterpenes against Drosophila melanogaster and Reticulitermes chinensis Snyder. Quantitative structure–activity relationship (QSAR) modeling was performed for both organisms, while docking and molecular dynamics were used only for Drosophila melanogaster . Neryl acetate has the lowest interaction energy (−87 kcal/mol) against active site of acetylcholinesterase, which is comparable to the ones of methiocarb and pirimicarb (−90 kcal/mol) and reported PDB binder 9-(3-iodobenzylamino)-1,2,3,4-tetrahydroacridine (−112.67 kcal/mol). Interaction stability was verified by molecular dynamics simulations and showed that the stability of ACHE active site complexes with three selected terpenes is comparable to the one of the pirimicarb and methiocarb. Overall, our results suggest that pulegone, citronellal, carvacrol, linalyl acetate, neryl acetate, citronellyl acetate, and geranyl acetate may be considered as a potential pesticide candidates.
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van der Waals Volumes and Radii
A. Bondì · The Journal of Physical Chemistry · 1964 · 19.2K citations