Publication | Open Access
Metadynamics of Paths
31
Citations
40
References
2020
Year
Computational BiophysicsMolecular KineticsChemical KineticsBiophysical ModelingEngineeringGeometric FlowKnot TheoryTrajectory SpaceMolecular BiologyUmbrella InversionGlobal AnalysisComputational ChemistrySystems BiologyMolecular DynamicsBiophysicsReactive Pathways
We present a method to sample reactive pathways via biased molecular dynamics simulations in trajectory space. We show that the use of enhanced sampling techniques enables unconstrained exploration of multiple reaction routes. Time correlation functions are conveniently computed via reweighted averages along a single trajectory and kinetic rates are accessed at no additional cost. These abilities are illustrated analyzing a model potential and the umbrella inversion of NH_{3} in water. The algorithm allows a parallel implementation and promises to be a powerful tool for the study of rare events.
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