Proceedings of the National Academy of Sciences · 2020 · 29 citations · 76 references
Natural SciencesChemistryPhysicsComputational ChemistryMolecular PhysicsTheoretical ChemistryIntermolecular ForcesIntermolecular InteractionsMolecular DynamicsMolecular InteractionsMolecular SimulationSolvation ModelingCoulomb InteractionDielectric ScreeningElectrostatic InteractionsIon CorrelationsLong-range Coulomb InteractionsPeriodic Boundary ConditionsPotential Of Mean ForceSolute-solvent Interactions
Coulomb interactions play a major role in determining the thermodynamics, structure, and dynamics of condensed-phase systems, but often present significant challenges. Computer simulations usually use periodic boundary conditions to minimize corrections from finite cell boundaries but the long range of the Coulomb interactions generates significant contributions from distant periodic images of the simulation cell, usually calculated by Ewald sum techniques. This can add significant overhead to computer simulations and hampers the development of intuitive local pictures and simple analytic theory. In this paper, we present a general framework based on local molecular field theory to accurately determine the contributions from long-ranged Coulomb interactions to the potential of mean force between ionic or apolar hydrophobic solutes in dilute aqueous solutions described by standard classical point charge water models. The simplest approximation leads to a short solvent (SS) model, with truncated solvent-solvent and solute-solvent Coulomb interactions and long-ranged but screened Coulomb interactions only between charged solutes. The SS model accurately describes the interplay between strong short-ranged solute core interactions, local hydrogen-bond configurations, and long-ranged dielectric screening of distant charges, competing effects that are difficult to capture in standard implicit solvent models.
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A smooth particle mesh Ewald method
Ulrich Essmann, L. Perera, Max L. Berkowitz et al. · The Journal of Chemical Physics · 1995 · 22.9K citations
Deep Potential Molecular Dynamics: A Scalable Model with the Accuracy of Quantum Mechanics
Linfeng Zhang, Jiequn Han, Han Wang et al. · Physical Review Letters · 2018 · 2.2K citations · Full text
Natural Sciences, Chemistry, Physics +17