Concepedia

Comparative transcriptome analysis of two common wheat varieties induced by 7Li-ion beam irradiation reveals mutation hotspot regions and associated pathways

Hongchun Xiong, Huijun Guo, Yongdun Xie, Jiayu Gu, Linshu Zhao, Shirong Zhao, Yuping Ding, Fuquan Kong, Li Sui, Luxiang Liu

Radiation Physics and Chemistry · 2019 · 13 citations · 44 references

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44

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim, Ben Langmead, Steven L. Salzberg · Nature Methods · 2015 · 26.1K citations · Full text

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text

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DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

Likun Wang, Zhixing Feng, Xi Wang et al. · Bioinformatics · 2009 · 4.9K citations · Full text

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Shifting the limits in wheat research and breeding using a fully annotated reference genome

R. Appels, Kellye Eversole, Nils Stein et al. · Science · 2018 · 3.4K citations · Full text

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