Concepedia

Core genome multi-locus sequence typing as an essential tool in a high-cost livestock-associated meticillin-resistant Staphylococcus aureus CC398 hospital outbreak

Marie Louise Slott Jensen, Marianne Nielsine Skov, Helle Kristiansen, Annette Toft, H. Lundgaard, Heidi Gumpert, Henrik Westh, Anette Holm, Hans Jørn Kolmos, Michael Kemp

Journal of Hospital Infection · 2019 · 18 citations · 36 references

DOI

Concepts

References

36

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

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Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text

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Identification of acquired antimicrobial resistance genes

Ea Zankari, Henrik Hasman, Salvatore Cosentino et al. · Journal of Antimicrobial Chemotherapy · 2012 · 5.2K citations · Full text

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<i>In Silico</i> Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli, Ea Zankari, Aurora García-Fernández et al. · Antimicrobial Agents and Chemotherapy · 2014 · 4.9K citations · Full text

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