BMC Genomics · 2019 · 11 citations · 34 references
Life SciencesGeneticsMicrobiologyCell SignalingPlant-microbe InteractionsSignal TransductionFungal EvolutionFungal GeneticsFungal GenomicsFungal MetabolismFungal PathogenesisFungal PhysiologyCompatible Solute TransportFungal Gene ExpressionFungal Signal TransductionOsmoregulationRapid AdaptationSignal Transduction In PathogenesisTranscriptome AnalysisWhole Transcriptome Analysis
BACKGROUND: One fundamental question in biology is how the evolution of eukaryotic signaling networks has taken place. "Loss of function" (lof) mutants from components of the high osmolarity glycerol (HOG) signaling pathway in the filamentous fungus Magnaporthe oryzae are viable, but impaired in osmoregulation. RESULTS: After long-term cultivation upon high osmolarity, stable individuals with reestablished osmoregulation capacity arise independently from each of the mutants with inactivated HOG pathway. This phenomenon is extremely reproducible and occurs only in osmosensitive mutants related to the HOG pathway - not in other osmosensitive Magnaporthe mutants. The major compatible solute produced by these adapted strains to cope with high osmolarity is glycerol, whereas it is arabitol in the wildtype strain. Genome and transcriptome analysis resulted in candidate genes related to glycerol metabolism, perhaps responsible for an epigenetic induced reestablishment of osmoregulation, since these genes do not show structural variations within the coding or promotor sequences. CONCLUSION: This is the first report of a stable adaptation in eukaryotes by producing different metabolites and opens a door for the scientific community since the HOG pathway is worked on intensively in many eukaryotic model organisms.
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Differential expression analysis for sequence count data
Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text
The dynamics of molecular evolution over 60,000 generations
Benjamin H. Good, Michael J. McDonald, Jeffrey E. Barrick et al. · Nature · 2017 · 844 citations · Full text