Nature Communications · 2019 · 522 citations · 53 references
Life SciencesEcologyMicrobiologyCommunity EcologyMicrobial EcologySoil MicrobiologyCommunity AssemblyFunctional DiversityMicrobial Community DynamicsMicrobial DiversityMicrobial Interactions In EcosystemsAlpha DiversityBeta DiversityDeterministic AssemblyEcosystem Function ImpactsLocal Species RichnessMicrobial Community DiversityNull Model AnalysisSoil Bacterial Diversity
A growing body of evidence suggests that microbial α-diversity (local species richness) may have positive effects on ecosystem function. However, less attention has been paid to β-diversity (the variation among local microbial assemblages). Here we studied the impact of microbial α-diversity on stochastic/deterministic microbial community assembly processes, which are related to β-diversity, and the consequences for community function. Bacterial communities differing in α-diversity were generated and their structures and potential community functional traits were inferred from DNA sequencing. Phylogenetic null modeling analysis suggests that stochastic assembly processes are dominant in high-diversity communities. However, in low-diversity communities, deterministic assembly processes are dominant, associating with the reduction of specialized functions that are correlated with specific bacterial taxa. Overall, we suggest that the low-diversity-induced deterministic community assembly processes may constrain community functions, highlighting the potential roles of specialized functions in community assembly and in generating and sustaining the function of soil ecosystems.
53
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
Picante: R tools for integrating phylogenies and ecology
Steven W. Kembel, Peter D. Cowan, Matthew R. Helmus et al. · Bioinformatics · 2010 · 6.4K citations · Full text
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
Jian Ye, George Coulouris, Irena Zaretskaya et al. · BMC Bioinformatics · 2012 · 6.2K citations · Full text