The diversity and biogeography of soil bacterial communities

TLDR

For centuries, biologists have studied continental-scale patterns of plant and animal diversity, but similar studies for microorganisms were impossible until recently. Here, we present a continental-scale description of soil bacterial communities and the environmental factors influencing their biodiversity. We collected 98 soil samples from across North and South America and used a ribosomal DNA‑fingerprinting method to compare bacterial community composition and diversity quantitatively across sites. Bacterial diversity was unrelated to temperature, latitude, or geographic distance, varied by ecosystem type, and was largely explained by soil pH, with highest diversity in neutral soils and lowest in acidic soils such as the Peruvian Amazon, indicating that microbial biogeography is driven mainly by edaphic variables rather than macroorganism patterns.

Abstract

For centuries, biologists have studied patterns of plant and animal diversity at continental scales. Until recently, similar studies were impossible for microorganisms, arguably the most diverse and abundant group of organisms on Earth. Here, we present a continental-scale description of soil bacterial communities and the environmental factors influencing their biodiversity. We collected 98 soil samples from across North and South America and used a ribosomal DNA-fingerprinting method to compare bacterial community composition and diversity quantitatively across sites. Bacterial diversity was unrelated to site temperature, latitude, and other variables that typically predict plant and animal diversity, and community composition was largely independent of geographic distance. The diversity and richness of soil bacterial communities differed by ecosystem type, and these differences could largely be explained by soil pH ( r 2 = 0.70 and r 2 = 0.58, respectively; P < 0.0001 in both cases). Bacterial diversity was highest in neutral soils and lower in acidic soils, with soils from the Peruvian Amazon the most acidic and least diverse in our study. Our results suggest that microbial biogeography is controlled primarily by edaphic variables and differs fundamentally from the biogeography of “macro” organisms.