Frontiers in Ecology and Evolution · 2019 · 62 citations · 43 references
AgriculturePlant PathologyPlant SciencesMicrobial EcologyMycologyPlant-microbe InteractionsDisease DynamicsFungal DiversityPlant PathogenesisPlant-associated Microbial CommunitiesPlant-pathogen InteractionsPlant-pathogenic FungiDisease Spread DynamicsFungal Community DiversityFungal Community EcologyFungal Disease DynamicsFungal Pathogen DetectionGeographical Distribution AnalysisPlant Disease ForecastingPlant Pathogen Ecology
As the world’s population grows, global food production will need to increase. While food production efficiency has increased in recent decades through pathogen control, climate change poses new challenges in crop protection against pathogens. Understanding the natural geographical distribution and dispersal likelihood of fungal plant pathogens is essential for forecasting disease plant spread. Here we used cultivation-independent techniques to identify fungal plant pathogens in 1,289 near-surface dust samples collected across the United States. We found that overall fungal pathogen community composition is more related to environmental conditions (in particular soil pH, precipitation and frost) than to agricultural hosts and practices. We also delimited five susceptibility geographical areas in the United States where different sets of pathogens tend to occur.
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Leo Breiman · Machine Learning · 2001 · 126.2K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
Conrad L. Schoch, Keith A. Seifert, Sabine M. Huhndorf et al. · Proceedings of the National Academy of Sciences · 2012 · 5.1K citations · Full text
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
Nhu Nguyen, Zewei Song, Scott T. Bates et al. · Fungal ecology · 2015 · 4.5K citations