Selective ribosome profiling to study interactions of translating ribosomes in yeast

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

Life Sciences, Bioinformatics, Molecular Biology +11

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

Life Sciences, Bioinformatics, Genetics +14

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

Nicholas T. Ingolia, Sina Ghaemmaghami, J. Robert Newman et al. · Science · 2009 · 4.1K citations · Full text

Life Sciences, Biochemistry, Molecular Biology +17

A versatile toolbox for PCR‐based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes

Carsten Janke, Maria M. Magiera, Nicole Rathfelder et al. · Yeast · 2004 · 2.3K citations

Life Sciences, Biotechnology, Genetics +15

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

Nicholas T. Ingolia, Gloria A. Brar, Silvi Rouskin et al. · Nature Protocols · 2012 · 1.4K citations · Full text

Life Sciences, Biochemistry, Molecular Biology +11