Concepedia

Dynamics of human defensin 5 (HD5) self-assembly in solution: Molecular simulations/insights

Phoom Chairatana, Jitti Niramitranon, Prapasiri Pongprayoon

Computational Biology and Chemistry · 2019 · 13 citations · 18 references

Concepts

Life SciencesBiologyBiophysicsMolecular BiophysicsProtein FoldingStructural BiologyMacromolecular AssemblyMolecular DynamicsProtein Complex AssemblyProtein DynamicsProtein StructureSelf-assemblyDefensin FamilyMolecular Dynamics Of AssemblyMolecular Dynamics Of FoldingProtein Self-assemblySelf-assembly Simulations

References

18

VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations

Natural Sciences, Biophysics, Physics +12

Molecular dynamics with coupling to an external bath

Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text

Natural Sciences, Chemistry, Physics +17

Particle mesh Ewald: An <i>N</i>⋅log(<i>N</i>) method for Ewald sums in large systems

Tom Darden, Darrin M. York, Lee G. Pedersen · The Journal of Chemical Physics · 1993 · 30.7K citations · Full text

Natural Sciences, Chemistry, Physics +13

GROMACS 3.0: a package for molecular simulation and trajectory analysis

Erik Lindahl, Berk Hess, David van der Spoel · Journal of Molecular Modeling · 2001 · 7K citations

Natural Sciences, Chemistry, Biomolecular Modeling +12

Human α-Defensin 6 Promotes Mucosal Innate Immunity Through Self-Assembled Peptide Nanonets

Hiutung Chu, Marzena Pazgier, Grace Jung et al. · Science · 2012 · 413 citations · Full text

Life Sciences, Immunology, Microbiology +17