Chirality · 2019 · 29 citations · 46 references
Natural SciencesChemistryPhysicsComputational ChemistryOrganic ChemistrySpectroscopyAmino Acid ChemistryCarboxylic AcidsCircular Dichroism SpectroscopyInfrared SpectroscopyMolecular SymmetryPeptide ChemistryAmino Acid SpectroscopyAmino AcidsCircular DichroismCyclic PeptidesFourier Transform Infrared SpectroscopyInfrared Absorption SpectroscopyMolecular Absorption SpectroscopyVibrational Circular Dichroism
Peptide models built from cis- and trans-2-aminocyclobutane-1-carboxylic acids (ACBCs) are studied in the solid phase by combining Fourier-transform infrared spectroscopy (FTIR) absorption spectroscopy, vibrational circular dichroism (VCD), and quantum chemical calculations using density functional theory (DFT). The studied systems are N-tert-butyloxycarbonyl (Boc) derivatives of 2-aminocyclobutanecarboxylic acid (ACBC) benzylamides, namely Boc-(cis-ACBC)-NH-Bn and Boc-(trans-ACBC)-NH-Bn. These two diastereomers show very different VCD signatures and intensities, which of the trans-ACBC derivative being one order of magnitude larger in the region of the ν (CO) stretch. The spectral signature of the cis-ACBC derivative is satisfactorily reproduced by that of the monomer extracted from the solid-state geometry of related ACBC derivatives, which shows that no long-range effects are implicated for this system. In terms of hydrogen bonds, the geometry of this monomer is intermediate between the C6 and C8 structures (exhibiting a 6- or 8-membered cyclic NH⋯O hydrogen bond) previously evidenced in the gas phase. The benzyl group must be in an extended geometry to reproduce satisfactorily the shape of the VCD spectrum in the ν (CO) range, which qualifies VCD as a potential probe of dispersion interaction. In contrast, reproducing the IR and VCD spectrum of the trans-ACBC derivative requires clusters larger than four units, exhibiting strong intermolecular H-bonding patterns. A qualitative agreement is obtained for a tetramer, although the intensity enhancement is not reproduced. These results underline the sensitivity of VCD to the long-range organisation in the crystal.
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Current Status of the AMOEBA Polarizable Force Field
Jay W. Ponder, Chuanjie Wu, Pengyu Ren et al. · The Journal of Physical Chemistry B · 2010 · 1.5K citations · Full text