Concepedia

Quality control and integration of genotypes from two calling pipelines for whole genome sequence data in the Alzheimer's disease sequencing project

Adam C. Naj, Honghuang Lin, Badri N Vardarajan, Simon White, Daniel Lancour, Yiyi Ma, Michael A. Schmidt, Fangui Sun, Mariusz Butkiewicz, William S. Bush,

Genomics · 2018 · 51 citations · 27 references

DOI

Concepts

References

27

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks et al. · Genome Research · 2010 · 28.9K citations · Full text

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo, Eric Banks, Ryan Poplin et al. · Nature Genetics · 2011 · 12.1K citations · Full text

, , +14

MultiQC: summarize analysis results for multiple tools and samples in a single report

Philip Ewels, Måns Magnusson, Sverker Lundin et al. · Bioinformatics · 2016 · 9.5K citations · Full text

A map of human genome variation from population-scale sequencing

Nature · 2010 · 8K citations · Full text

, , +6

From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline

Geraldine Van Der Auwera, Mauricio O. Carneiro, Christopher Hartl et al. · Current Protocols in Bioinformatics · 2013 · 7K citations