Concepedia

BUD13 Promotes a Type I Interferon Response by Countering Intron Retention in Irf7

Luke Frankiw, Devdoot Majumdar, Christian Burns, Logan Vlach, Annie Moradian, Michael J. Sweredoski, David Baltimore

Molecular Cell · 2019 · 51 citations · 40 references

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References

40

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

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An integrated encyclopedia of DNA elements in the human genome

Nature · 2012 · 19.4K citations · Full text

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

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rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

Shihao Shen, Juw Won Park, Zhixiang Lu et al. · Proceedings of the National Academy of Sciences · 2014 · 2.9K citations · Full text

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