mSphere · 2017 · 11 citations · 88 references
Life SciencesEvolutionary BiologyMicrobiologyBacteriologyHost-pathogen InteractionsMicrobial PathogenesisBacterial PathogenesisBacterial Virulence FactorsMicrobial Evolutionary GenomicsMicrobial Virulence FactorsPathogen EvolutionPathogen Virulence FactorsBacterial AdhesinsBacterial Invasion MechanismsEvolution Of Virulence FactorsFibronectin BindingMolecular Evolution Of PathogensNovel Pathogen EmergencePathogen AdhesinsVirulence Factor Identification
Staphylococcus saprophyticus is an important cause of urinary tract infections (UTI) in women; such UTI are common, can be severe, and are associated with significant impacts to public health. In addition to being a cause of human UTI, S. saprophyticus can be found in the environment, in food, and associated with animals. After discovering that UTI strains of S. saprophyticus are for the most part closely related to each other, we sought to determine whether these strains are specially adapted to cause disease in humans. We found evidence suggesting that a mutation in the gene aas is advantageous in the context of human infection. We hypothesize that the mutation allows S. saprophyticus to survive better in the human urinary tract. These results show how bacteria found in the environment can evolve to cause disease.
88
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations
ESTIMATING<i>F</i>-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
B. S. Weir, C. Clark Cockerham · Evolution · 1984 · 16.9K citations