VfoldLA: A web server for loop assembly-based prediction of putative 3D RNA structures

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

Marc Parisien, François Major · Nature · 2008 · 871 citations

Bioinformatics, Natural Sciences, Genetics +10

Automated 3D structure composition for large RNAs

Mariusz Popenda, Marta Szachniuk, Maciej Antczak et al. · Nucleic Acids Research · 2012 · 771 citations · Full text

Large Rnas, Functional Genomics, Structural Bioinformatics +12

Automated <i>de novo</i> prediction of native-like RNA tertiary structures

Rhiju Das, David Baker · Proceedings of the National Academy of Sciences · 2007 · 452 citations · Full text

Biology, Base Triplets, Phylogenetics +15

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

M. Boniecki, Wayne Dawson, Konrad Tomala et al. · Nucleic Acids Research · 2015 · 451 citations · Full text

Engineering, Structural Bioinformatics, Biomolecular Structure Prediction +20

Atomic accuracy in predicting and designing noncanonical RNA structure

Rhiju Das, John Karanicolas, David Baker · Nature Methods · 2010 · 388 citations · Full text

Engineering, Medicine, Rna Structure Prediction +6