Transcriptomics data of 11 species of yeast identically grown in rich media and oxidative stress conditions

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22K citations · Full text

Long-read Sequencing, Functional Genomics, Natural Sciences +12

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff et al. · Nature Protocols · 2012 · 12.6K citations · Full text

Differential Gene, Natural Sciences, Genetics +11

Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes

Audrey P. Gasch, Paul T. Spellman, Camilla M. Kao et al. · Molecular Biology of the Cell · 2000 · 4.9K citations

The Role of Nucleosome Positioning in the Evolution of Gene Regulation

Alexander M. Tsankov, Dawn Thompson, Amanda Socha et al. · PLoS Biology · 2010 · 228 citations · Full text

Genetics, Genomic Mechanism, Gene Regulatory Network +21

Proposed methods for testing and selecting the ERCC external RNA controls

BMC Genomics · 2005 · 193 citations · Full text