Journal of Proteome Research · 2019 · 26 citations · 21 references
Life SciencesBiochemistryClinical BiochemistryInflammationMetabolomicsBioanalytical Method ValidationBiomarker AnalysisInflammatory BiomarkersMetabolite ProfilingMetabolite QuantificationMetabolomics Quality ControlBlood Sample CollectionInflammation-related BiomarkersPlasma SamplingPreanalytical Sample HandlingPreanalytical VariabilityProtein BiomarkersQuality Control In Metabolite ProfilingRoom-temperature Storage
Discrepancies in blood sample collection and processing could have a significant impact on levels of metabolites, peptides, and protein biomarkers of inflammation in the blood; thus, sample quality control is critical for successful biomarker identification and validation. In this study, we analyzed the effects of several preanalytical processing conditions, including different storage times and temperatures for blood or plasma samples and different centrifugation forces on the levels of metabolites, peptides, and inflammation biomarkers in human plasma samples using ethylenediaminetetraacetic acid (EDTA) as an anticoagulant. Temperature was found to be the major factor for metabolite variation, and both time and temperature were identified as major factors for peptide variation. For inflammation biomarkers, temperature played different roles depending on the sample type (blood or plasma). Low temperature affected inflammation biomarkers in blood, while room temperature impacted inflammation biomarkers in plasma.
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mixOmics: An R package for ‘omics feature selection and multiple data integration
Florian Rohart, Benoît Gautier, Amrit Singh et al. · PLoS Computational Biology · 2017 · 3.9K citations · Full text