Journal of Clinical Microbiology · 2019 · 59 citations · 32 references
MedicineInfectious DiseasesPathologyDiagnostic MicrobiologyGastroenterologyMolecular DiagnosticsAntibiotic ResistanceGastric DiseasesGastric DisordersGastrointestinal Pathogen DiagnosticsMutation AnalysisPathogen DetectionAntibiotic Resistance TestingAntimicrobial Resistance Gene DetectionClarithromycin ResistanceGene Mutation DetectionHelicobacter Pylori InfectionHelicobacter Pylori TestingMolecular Detection AssaysMutation
< 0.001). This NGS assay can be used on remnant specimens collected during standard-of-care testing to detect mutations that correlate with increased risk of treatment failure. A prospective study is needed to determine if the risk of treatment failure can be decreased by using this assay to guide antibiotic therapy.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text