Concepedia

Genome-informed Bradyrhizobium taxonomy: where to from here?

Juanita R. Avontuur, Marike Palmer, Chrizelle W. Beukes, Wai Chan, Martin P. A. Coetzee, Jochen Blom, Tomasz Stępkowski, Nikos C. Kyrpides, Tanja Woyke, Nicole Shapiro,

Systematic and Applied Microbiology · 2019 · 99 citations · 101 references

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References

101

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Matthew D. Kearse, Richard Moir, Amy Wilson et al. · Bioinformatics · 2012 · 20.8K citations · Full text

, , +7

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research · 2015 · 12.8K citations · Full text

, , +17

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Bioinformatics · 2005 · 12.1K citations · Full text

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